Variant report

Variant	rs73403115
Chromosome Location	chr7:98800458-98800459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17161596	1.00[AMR][1000 genomes]
rs2008424	1.00[AMR][1000 genomes]
rs41417549	1.00[AMR][1000 genomes]
rs60470212	1.00[AMR][1000 genomes]
rs60686896	1.00[AMR][1000 genomes]
rs61099450	1.00[AMR][1000 genomes]
rs61147937	1.00[AMR][1000 genomes]
rs61239848	1.00[AMR][1000 genomes]
rs61742315	1.00[AMR][1000 genomes]
rs6942400	1.00[AMR][1000 genomes]
rs73401318	1.00[AMR][1000 genomes]
rs73401319	1.00[AMR][1000 genomes]
rs73401334	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405119	1.00[AMR][1000 genomes]
rs73407298	1.00[AMR][1000 genomes]
rs73407301	1.00[AMR][1000 genomes]
rs7806536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98792200-98803600	Weak transcription	Stomach Mucosa	stomach
2	chr7:98798000-98800600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:98800200-98801000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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