Variant report

Variant	rs73405119
Chromosome Location	chr7:98816184-98816185
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17161596	1.00[AMR][1000 genomes]
rs2008424	1.00[AMR][1000 genomes]
rs41417549	1.00[AMR][1000 genomes]
rs60470212	1.00[AMR][1000 genomes]
rs60686896	1.00[AMR][1000 genomes]
rs61099450	1.00[AMR][1000 genomes]
rs61147937	1.00[AMR][1000 genomes]
rs61239848	1.00[AMR][1000 genomes]
rs61742315	1.00[AMR][1000 genomes]
rs6942400	1.00[AMR][1000 genomes]
rs73401318	1.00[AMR][1000 genomes]
rs73401319	1.00[AMR][1000 genomes]
rs73401334	1.00[AMR][1000 genomes]
rs73403115	1.00[AMR][1000 genomes]
rs73403124	1.00[AMR][1000 genomes]
rs73407298	1.00[AMR][1000 genomes]
rs73407301	1.00[AMR][1000 genomes]
rs7806536	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98802600-98823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98811000-98827600	Weak transcription	Right Atrium	heart
3	chr7:98814000-98817400	Enhancers	Stomach Mucosa	stomach
4	chr7:98815000-98816200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:98815000-98816800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:98815600-98816800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:98815800-98816400	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:98815800-98816800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:98816000-98816400	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr7:98816000-98816600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr7:98816000-98816600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:98816000-98816600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:98816000-98816800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr7:98816000-98816800	Flanking Bivalent TSS/Enh	HepG2	liver
15	chr7:98816000-98817200	Enhancers	Fetal Intestine Small	intestine
16	chr7:98816000-98817200	Enhancers	A549	lung
17	chr7:98816000-98817400	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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