Variant report

Variant	rs17162141
Chromosome Location	chr11:72105592-72105593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72105175..72107187-chr11:72143620..72145329,2	MCF-7	breast:
2	chr11:72100008..72102781-chr11:72103941..72105865,2	K562	blood:

Variant related genes	Relation type
ENSG00000162129	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1160142	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11821309	1.00[EUR][1000 genomes]
rs17160018	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17162130	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17162135	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17847215	1.00[EUR][1000 genomes]
rs2508200	0.82[ASN][1000 genomes]
rs2886351	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35340702	1.00[EUR][1000 genomes]
rs4268536	1.00[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4475949	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4488227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57431438	1.00[EUR][1000 genomes]
rs57824428	1.00[EUR][1000 genomes]
rs58058345	0.89[ASN][1000 genomes]
rs58515298	0.92[ASN][1000 genomes]
rs58571741	0.92[ASN][1000 genomes]
rs7109307	0.89[ASN][1000 genomes]
rs730042	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73528804	1.00[EUR][1000 genomes]
rs73528860	0.80[ASN][1000 genomes]
rs73545636	1.00[EUR][1000 genomes]
rs7927430	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72065000-72110800	Weak transcription	Hela-S3	cervix
2	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:72091400-72106600	Weak transcription	Aorta	Aorta
5	chr11:72091400-72106600	Weak transcription	Ovary	ovary
6	chr11:72091400-72109600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:72091400-72111400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:72091600-72119200	Weak transcription	Thymus	Thymus
9	chr11:72093800-72109400	Weak transcription	Pancreas	Pancrea
10	chr11:72095200-72112800	Weak transcription	Fetal Stomach	stomach
11	chr11:72095600-72106600	Weak transcription	Fetal Heart	heart
12	chr11:72095800-72110600	Weak transcription	Dnd41	blood
13	chr11:72096200-72108000	Weak transcription	Primary B cells from cord blood	blood
14	chr11:72096200-72110600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:72096400-72105600	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:72098200-72108800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:72099000-72106600	Weak transcription	Right Ventricle	heart
18	chr11:72099200-72105600	Weak transcription	Esophagus	oesophagus
19	chr11:72099200-72105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:72099200-72105800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:72099200-72106800	Weak transcription	Adipose Nuclei	Adipose
22	chr11:72099200-72110600	Weak transcription	HSMM	muscle
23	chr11:72099200-72110800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:72099200-72111200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:72099200-72111400	Weak transcription	HSMMtube	muscle
26	chr11:72099200-72111600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:72099200-72111600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:72099200-72112800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:72099200-72112800	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:72099200-72112800	Weak transcription	Lung	lung
31	chr11:72099200-72115000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:72099200-72115600	Weak transcription	NHDF-Ad	bronchial
33	chr11:72099200-72122800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:72099600-72125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:72099600-72125000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:72100000-72109200	Weak transcription	Osteobl	bone
37	chr11:72100200-72111400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:72100400-72117400	Weak transcription	HMEC	breast
39	chr11:72101400-72106800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:72101400-72111600	Weak transcription	Gastric	stomach
41	chr11:72102000-72110800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:72102000-72111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:72102400-72111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:72102600-72105600	Weak transcription	Primary T cells from cord blood	blood
45	chr11:72102600-72112600	Weak transcription	Fetal Intestine Small	intestine
46	chr11:72103400-72106600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:72103400-72109000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:72103400-72111400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:72103400-72120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:72103600-72106000	Weak transcription	Monocytes-CD14+_RO01746	blood

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