Variant report

Variant	rs17233850
Chromosome Location	chr13:93386072-93386073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs7317017	0.95[CEU][hapmap]
rs7322501	0.94[CEU][hapmap]
rs9301833	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs9516129	1.00[CEU][hapmap];0.81[LWK][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap]
rs9523776	0.95[CEU][hapmap]
rs9523787	0.95[CEU][hapmap];0.82[TSI][hapmap]
rs9523788	0.93[CEU][hapmap]
rs9523790	1.00[CEU][hapmap]
rs9523791	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap]
rs9523792	1.00[CEU][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs9523793	0.91[CEU][hapmap];0.81[LWK][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap]
rs9561132	1.00[CEU][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93385400-93387600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links