Variant report

Variant	rs9523788
Chromosome Location	chr13:93366223-93366224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17233850	0.93[CEU][hapmap]
rs41300596	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7317017	1.00[CEU][hapmap]
rs7322501	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs9301833	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs9516115	0.88[ASN][1000 genomes]
rs9516119	0.93[ASN][1000 genomes]
rs9516129	0.93[CEU][hapmap]
rs9523761	0.88[ASN][1000 genomes]
rs9523776	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9523787	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9523789	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523790	0.94[CEU][hapmap]
rs9523791	0.81[CEU][hapmap]
rs9523792	0.93[CEU][hapmap]
rs9523793	0.81[CEU][hapmap]
rs9561132	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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