Variant report

Variant	rs9523790
Chromosome Location	chr13:93381946-93381947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17233850	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs41300596	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7317017	0.95[CEU][hapmap]
rs7322501	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs9301833	0.86[CEU][hapmap]
rs9516129	1.00[CEU][hapmap]
rs9516132	1.00[YRI][hapmap]
rs9516133	1.00[YRI][hapmap]
rs9516134	1.00[YRI][hapmap]
rs9523776	0.95[CEU][hapmap]
rs9523787	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs9523788	0.94[CEU][hapmap]
rs9523789	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9523791	0.94[CEU][hapmap]
rs9523792	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9523793	0.91[CEU][hapmap]
rs9523809	1.00[YRI][hapmap]
rs9523811	1.00[YRI][hapmap]
rs9523812	1.00[YRI][hapmap]
rs9523815	1.00[YRI][hapmap]
rs9523816	1.00[YRI][hapmap]
rs9561132	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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