Variant report

Variant	rs9301833
Chromosome Location	chr13:93380406-93380407
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17233850	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs41300596	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7317017	0.90[CEU][hapmap];0.97[TSI][hapmap]
rs7322501	0.89[CEU][hapmap];0.98[EUR][1000 genomes]
rs9516115	0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs9516119	1.00[ASW][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9516129	0.86[CEU][hapmap];0.86[TSI][hapmap]
rs9523741	1.00[JPT][hapmap]
rs9523752	0.88[CHD][hapmap];0.85[JPT][hapmap]
rs9523761	0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs9523776	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs9523787	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs9523788	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs9523789	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523790	0.86[CEU][hapmap]
rs9523791	0.86[TSI][hapmap]
rs9523792	0.86[CEU][hapmap];0.86[TSI][hapmap]
rs9561132	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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