Variant report

Variant	rs1723522
Chromosome Location	chr6:64018037-64018038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12111218	0.82[MKK][hapmap]
rs1616719	0.87[AFR][1000 genomes]
rs1711894	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711917	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723515	1.00[AMR][1000 genomes]
rs1723520	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723521	1.00[MEX][hapmap]
rs1723524	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723534	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741781	0.85[AFR][1000 genomes]
rs1741793	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741812	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1878460	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2800014	1.00[MEX][hapmap]
rs7776434	0.82[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64012400-64018200	Enhancers	Fetal Intestine Small	intestine
2	chr6:64016800-64018400	Enhancers	Fetal Intestine Large	intestine
3	chr6:64017600-64018200	Enhancers	A549	lung
4	chr6:64017800-64018200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:64018000-64018400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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