Variant report

Variant	rs1723534
Chromosome Location	chr6:63993980-63993981
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12111218	0.82[MKK][hapmap]
rs1711894	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711917	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723515	1.00[AMR][1000 genomes]
rs1723520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723521	1.00[MEX][hapmap]
rs1723522	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723524	0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723525	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741793	1.00[AMR][1000 genomes]
rs1741812	1.00[AMR][1000 genomes]
rs1878460	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2800014	1.00[MEX][hapmap]
rs7776434	0.82[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63985200-64014200	Weak transcription	A549	lung
2	chr6:63989400-63995400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:63990800-64003200	Weak transcription	Placenta	Placenta
4	chr6:63992000-63995200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:63992000-63995800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:63992200-63995200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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