Variant report

Variant	rs1878460
Chromosome Location	chr6:64024339-64024340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1616719	0.91[AFR][1000 genomes]
rs1711894	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711917	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723515	1.00[AMR][1000 genomes]
rs1723520	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723522	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723524	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723525	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1723534	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741781	0.89[AFR][1000 genomes]
rs1741793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741812	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64018200-64050800	Weak transcription	A549	lung
2	chr6:64024000-64024400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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