Variant report

Variant	rs17240671
Chromosome Location	chr15:58492967-58492968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AQP9-2	chr15:58492805-58493217	NONHSAT044101

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16939839	0.86[EUR][1000 genomes]
rs17240643	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[EUR][1000 genomes]
rs17240650	0.90[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17821086	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17821117	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17821135	0.89[EUR][1000 genomes]
rs2271678	0.90[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2292714	0.91[EUR][1000 genomes]
rs2414543	0.86[EUR][1000 genomes]
rs2414544	0.86[EUR][1000 genomes]
rs2414545	0.86[EUR][1000 genomes]
rs3784248	0.83[EUR][1000 genomes]
rs3784255	0.91[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3825777	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55672049	0.89[EUR][1000 genomes]
rs55808100	0.90[EUR][1000 genomes]
rs55832939	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55860231	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55885730	0.95[EUR][1000 genomes]
rs56099208	0.93[EUR][1000 genomes]
rs56141765	0.95[EUR][1000 genomes]
rs66717621	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66881380	0.87[EUR][1000 genomes]
rs66896776	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs67670862	0.87[EUR][1000 genomes]
rs67683432	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7161943	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7179531	0.87[EUR][1000 genomes]
rs7181378	0.86[EUR][1000 genomes]
rs72737450	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72743586	0.86[EUR][1000 genomes]
rs935204	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58492000-58493000	Weak transcription	Pancreas	Pancrea
2	chr15:58492800-58493000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:58492800-58493000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:58492800-58493200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:58492800-58493200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:58492800-58494000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:58492800-58494800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:58492800-58497800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:58492800-58498400	Enhancers	NHDF-Ad	bronchial

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