Variant report

Variant	rs7161943
Chromosome Location	chr15:58485463-58485464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58479445..58483146-chr15:58484303..58486814,3	K562	blood:
2	chr15:58481646..58483822-chr15:58485314..58486838,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1317851	0.81[EUR][1000 genomes]
rs16939839	0.87[EUR][1000 genomes]
rs17240643	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[TSI][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17240650	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17240671	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17821086	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17821117	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17821135	0.88[EUR][1000 genomes]
rs1814461	0.81[EUR][1000 genomes]
rs2271678	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2292714	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2414537	0.81[EUR][1000 genomes]
rs2414538	0.81[EUR][1000 genomes]
rs2414539	0.81[EUR][1000 genomes]
rs2414543	0.87[EUR][1000 genomes]
rs2414544	0.87[EUR][1000 genomes]
rs2414545	0.87[EUR][1000 genomes]
rs3784248	0.84[EUR][1000 genomes]
rs3784255	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3825777	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55672049	0.88[EUR][1000 genomes]
rs55808100	0.89[EUR][1000 genomes]
rs55832939	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55860231	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55885730	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56099208	0.92[EUR][1000 genomes]
rs56141765	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61113628	0.81[EUR][1000 genomes]
rs66717621	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66881380	0.88[EUR][1000 genomes]
rs66896776	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs67670862	0.88[EUR][1000 genomes]
rs67683432	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7165818	0.81[EUR][1000 genomes]
rs7165997	0.81[EUR][1000 genomes]
rs7179531	0.88[EUR][1000 genomes]
rs7181378	0.87[EUR][1000 genomes]
rs72737450	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72743586	0.87[EUR][1000 genomes]
rs7496709	0.80[EUR][1000 genomes]
rs935204	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58481600-58485800	Weak transcription	K562	blood

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