Variant report

Variant	rs17309028
Chromosome Location	chr2:210329142-210329143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13383482	0.85[EUR][1000 genomes]
rs13394033	0.85[EUR][1000 genomes]
rs16843062	0.92[EUR][1000 genomes]
rs16843177	0.92[EUR][1000 genomes]
rs17237076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17238784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17239083	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17308504	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17309518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17316313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17317645	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17317756	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs288095	0.92[EUR][1000 genomes]
rs58195909	0.96[EUR][1000 genomes]
rs59649490	0.96[EUR][1000 genomes]
rs59999353	0.96[EUR][1000 genomes]
rs60457662	0.96[EUR][1000 genomes]
rs73067004	0.96[EUR][1000 genomes]
rs73069087	0.96[EUR][1000 genomes]
rs73069088	0.96[EUR][1000 genomes]
rs73069096	0.96[EUR][1000 genomes]
rs7603804	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210306600-210337000	Weak transcription	Aorta	Aorta
2	chr2:210319800-210331200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:210319800-210341000	Weak transcription	Fetal Brain Female	brain
4	chr2:210322600-210337200	Weak transcription	Brain Anterior Caudate	brain
5	chr2:210325200-210329600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210327400-210330400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210328200-210340000	Weak transcription	Brain Germinal Matrix	brain
8	chr2:210328800-210330200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr2:210328800-210333400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:210329000-210333400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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