Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210363883..210366615-chr2:210368582..210372932,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13383482	0.85[EUR][1000 genomes]
rs13394033	0.85[EUR][1000 genomes]
rs16843062	0.92[EUR][1000 genomes]
rs16843177	0.92[EUR][1000 genomes]
rs17237076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17238784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17239083	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17308504	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17309028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17309518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17317645	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17317756	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs288095	0.92[EUR][1000 genomes]
rs58195909	0.96[EUR][1000 genomes]
rs59649490	0.96[EUR][1000 genomes]
rs59999353	0.96[EUR][1000 genomes]
rs60457662	0.96[EUR][1000 genomes]
rs73067004	0.96[EUR][1000 genomes]
rs73069087	0.96[EUR][1000 genomes]
rs73069088	0.96[EUR][1000 genomes]
rs73069096	0.96[EUR][1000 genomes]
rs7603804	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210360200-210366000	Weak transcription	Psoas Muscle	Psoas
2	chr2:210360200-210366400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:210361800-210376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:210363600-210365200	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:210363600-210365400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:210363600-210365800	Weak transcription	Fetal Brain Female	brain
7	chr2:210363600-210370800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:210363600-210378400	Weak transcription	Brain Germinal Matrix	brain
9	chr2:210363800-210365800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:210364000-210365200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:210364600-210366200	Weak transcription	Aorta	Aorta
12	chr2:210364600-210387600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea

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