Variant report

Variant	rs13394033
Chromosome Location	chr2:210457694-210457695
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10048829	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10174634	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs10179388	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10196953	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10197252	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs11897507	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11899684	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11901333	0.81[AMR][1000 genomes]
rs12328955	0.81[EUR][1000 genomes]
rs12619473	1.00[CEU][hapmap]
rs13383482	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13384979	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13392785	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs13399574	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13428159	0.81[EUR][1000 genomes]
rs1509472	1.00[CEU][hapmap]
rs16843062	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16843177	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs16843513	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16843555	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17237076	0.85[EUR][1000 genomes]
rs17238784	0.85[EUR][1000 genomes]
rs17239083	0.89[EUR][1000 genomes]
rs17308504	0.81[EUR][1000 genomes]
rs17309028	0.85[EUR][1000 genomes]
rs17309518	0.85[EUR][1000 genomes]
rs17316313	0.85[EUR][1000 genomes]
rs17317100	1.00[CEU][hapmap]
rs17317645	0.85[EUR][1000 genomes]
rs17317756	0.89[EUR][1000 genomes]
rs17745550	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs288095	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4392185	0.81[EUR][1000 genomes]
rs55677311	0.81[EUR][1000 genomes]
rs55888621	0.81[EUR][1000 genomes]
rs58195909	0.81[EUR][1000 genomes]
rs59649490	0.81[EUR][1000 genomes]
rs59999353	0.81[EUR][1000 genomes]
rs60457662	0.81[EUR][1000 genomes]
rs6435535	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6716675	1.00[CEU][hapmap]
rs6751280	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs73067004	0.81[EUR][1000 genomes]
rs73069087	0.81[EUR][1000 genomes]
rs73069088	0.81[EUR][1000 genomes]
rs73069096	0.81[EUR][1000 genomes]
rs73072898	0.81[EUR][1000 genomes]
rs73074703	0.81[EUR][1000 genomes]
rs73074704	0.81[EUR][1000 genomes]
rs73074714	0.81[EUR][1000 genomes]
rs73074716	0.81[EUR][1000 genomes]
rs73074718	0.81[EUR][1000 genomes]
rs73074722	0.81[EUR][1000 genomes]
rs73074726	0.81[EUR][1000 genomes]
rs73074728	0.81[EUR][1000 genomes]
rs7577387	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7603804	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs877782	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336895	chr2:210457557-210459655	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210443600-210461000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:210446600-210461600	Weak transcription	Brain Angular Gyrus	brain
3	chr2:210447800-210460400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:210456400-210464400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:210456800-210458200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:210456800-210458800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210457000-210465200	Weak transcription	Fetal Brain Female	brain
8	chr2:210457000-210465400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:210457200-210458800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210457400-210459000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:210457400-210460400	Weak transcription	Left Ventricle	heart
12	chr2:210457400-210463200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:210457400-210465000	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links