Variant report

Variant	rs10197252
Chromosome Location	chr2:210532988-210532989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10048829	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10170320	0.87[TSI][hapmap]
rs10174634	1.00[CEU][hapmap]
rs10179388	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs10189166	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10189639	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10196953	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11897507	0.81[EUR][1000 genomes]
rs11899684	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12328955	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12619473	1.00[CEU][hapmap]
rs13383482	0.81[EUR][1000 genomes]
rs13384979	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13392785	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13394033	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs13399574	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13428159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1509472	1.00[CEU][hapmap]
rs16843177	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16843513	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16843555	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17238784	1.00[GIH][hapmap];0.81[TSI][hapmap]
rs17317100	1.00[CEU][hapmap]
rs17745550	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs288095	1.00[CEU][hapmap]
rs4392185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55677311	1.00[EUR][1000 genomes]
rs55888621	1.00[EUR][1000 genomes]
rs6435535	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6716675	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6751280	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072898	1.00[EUR][1000 genomes]
rs73074703	1.00[EUR][1000 genomes]
rs73074704	1.00[EUR][1000 genomes]
rs73074714	1.00[EUR][1000 genomes]
rs73074716	1.00[EUR][1000 genomes]
rs73074718	1.00[EUR][1000 genomes]
rs73074722	1.00[EUR][1000 genomes]
rs73074726	1.00[EUR][1000 genomes]
rs73074728	1.00[EUR][1000 genomes]
rs7577387	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes]
rs7603804	1.00[CEU][hapmap]
rs877782	1.00[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210518200-210543200	Weak transcription	Aorta	Aorta
2	chr2:210528600-210534000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:210528600-210550200	Weak transcription	Brain Substantia Nigra	brain
4	chr2:210528800-210533800	Weak transcription	Brain Anterior Caudate	brain
5	chr2:210528800-210550200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:210530400-210536000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:210531200-210533800	Weak transcription	Fetal Brain Male	brain
8	chr2:210531200-210535400	Weak transcription	Fetal Brain Female	brain
9	chr2:210531400-210533800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:210531400-210534600	Weak transcription	Brain Germinal Matrix	brain
11	chr2:210531400-210535800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:210531400-210587800	Weak transcription	Brain Angular Gyrus	brain
13	chr2:210532400-210535400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:210532400-210537000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr2:210532800-210535000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:210532800-210535600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr2:210532800-210536000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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