Variant report

Variant	rs73072898
Chromosome Location	chr2:210561962-210561963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10048829	0.81[EUR][1000 genomes]
rs10174634	0.90[AMR][1000 genomes]
rs10179388	0.90[AMR][1000 genomes]
rs10189166	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10189639	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10196953	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10197252	1.00[EUR][1000 genomes]
rs11897507	0.81[EUR][1000 genomes]
rs11899684	0.81[EUR][1000 genomes]
rs11901333	0.81[AMR][1000 genomes]
rs12328955	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13383482	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13384979	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13392785	1.00[EUR][1000 genomes]
rs13394033	0.81[EUR][1000 genomes]
rs13399574	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13428159	1.00[EUR][1000 genomes]
rs16843513	1.00[EUR][1000 genomes]
rs16843555	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17745550	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4392185	1.00[EUR][1000 genomes]
rs55677311	1.00[EUR][1000 genomes]
rs55888621	1.00[EUR][1000 genomes]
rs6435535	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6716675	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6751280	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074703	1.00[EUR][1000 genomes]
rs73074704	1.00[EUR][1000 genomes]
rs73074711	0.99[AFR][1000 genomes]
rs73074714	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074716	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074718	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074722	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074726	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074728	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577387	1.00[EUR][1000 genomes]
rs7603804	0.90[AMR][1000 genomes]
rs877782	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210531400-210587800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210537000-210596800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:210541800-210596400	Weak transcription	Gastric	stomach
4	chr2:210544000-210596600	Weak transcription	Ovary	ovary
5	chr2:210544400-210598600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:210552800-210599400	Weak transcription	Pancreas	Pancrea
7	chr2:210553000-210583800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:210554200-210565400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:210554800-210562800	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:210555600-210600200	Weak transcription	Left Ventricle	heart
11	chr2:210557800-210568800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:210558000-210578800	Weak transcription	HUVEC	blood vessel
13	chr2:210558000-210598600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:210558200-210568800	Weak transcription	Brain Anterior Caudate	brain
15	chr2:210558200-210577200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:210559600-210574600	Weak transcription	Aorta	Aorta
17	chr2:210559600-210588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:210560000-210562200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:210560800-210562400	Enhancers	Brain Hippocampus Middle	brain
20	chr2:210560800-210570200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr2:210560800-210570600	Weak transcription	Fetal Brain Female	brain
22	chr2:210561400-210562000	Flanking Active TSS	GM12878-XiMat	blood
23	chr2:210561400-210562200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:210561600-210562000	Enhancers	Brain Germinal Matrix	brain
25	chr2:210561600-210562400	Enhancers	Fetal Brain Male	brain
26	chr2:210561800-210562200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:210561800-210562200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr2:210561800-210562200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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