Variant report

Variant	rs10048829
Chromosome Location	chr2:210478162-210478163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10174634	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10179388	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10189166	0.89[EUR][1000 genomes]
rs10196953	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10197252	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11897507	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11899684	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11901333	0.81[AMR][1000 genomes]
rs12328955	0.81[EUR][1000 genomes]
rs12619473	1.00[CEU][hapmap]
rs13383482	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13384979	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs13392785	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13394033	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13399574	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs13428159	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1509472	1.00[CEU][hapmap]
rs16843062	0.89[AMR][1000 genomes]
rs16843177	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16843513	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16843555	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17317100	1.00[CEU][hapmap]
rs17745550	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs288095	1.00[CEU][hapmap]
rs4392185	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55677311	0.81[EUR][1000 genomes]
rs55888621	0.81[EUR][1000 genomes]
rs6435535	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6716675	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6751280	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs73072898	0.81[EUR][1000 genomes]
rs73074703	0.81[EUR][1000 genomes]
rs73074704	0.81[EUR][1000 genomes]
rs73074714	0.81[EUR][1000 genomes]
rs73074716	0.81[EUR][1000 genomes]
rs73074718	0.81[EUR][1000 genomes]
rs73074722	0.81[EUR][1000 genomes]
rs73074726	0.81[EUR][1000 genomes]
rs73074728	0.81[EUR][1000 genomes]
rs7577387	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7603804	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs877782	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210469800-210478600	Weak transcription	Brain Germinal Matrix	brain
2	chr2:210474000-210481400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:210475200-210478600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:210475400-210478200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:210475600-210478800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:210476400-210478400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:210476400-210478600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:210476600-210480200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:210476600-210493600	Weak transcription	Aorta	Aorta
10	chr2:210477000-210480400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:210477200-210478200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:210477200-210481600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr2:210477400-210478600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:210477400-210478800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr2:210477600-210478600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:210477600-210479400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:210477800-210478400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:210478000-210480400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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