Variant report

Variant	rs73074726
Chromosome Location	chr2:210592767-210592768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10048829	0.81[EUR][1000 genomes]
rs10174634	0.90[AMR][1000 genomes]
rs10179388	0.90[AMR][1000 genomes]
rs10189166	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10189639	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10196953	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10197252	1.00[EUR][1000 genomes]
rs11897507	0.81[EUR][1000 genomes]
rs11899684	0.81[EUR][1000 genomes]
rs11901333	0.81[AMR][1000 genomes]
rs12328955	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13383482	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13384979	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13392785	1.00[EUR][1000 genomes]
rs13394033	0.81[EUR][1000 genomes]
rs13399574	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13428159	1.00[EUR][1000 genomes]
rs16843513	1.00[EUR][1000 genomes]
rs16843555	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17745550	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4392185	1.00[EUR][1000 genomes]
rs55677311	1.00[EUR][1000 genomes]
rs55888621	1.00[EUR][1000 genomes]
rs6435535	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6716675	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6751280	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072898	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074703	1.00[EUR][1000 genomes]
rs73074704	1.00[EUR][1000 genomes]
rs73074711	0.91[AFR][1000 genomes]
rs73074714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074716	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074718	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074722	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074728	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577387	1.00[EUR][1000 genomes]
rs7603804	0.90[AMR][1000 genomes]
rs877782	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210537000-210596800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:210541800-210596400	Weak transcription	Gastric	stomach
3	chr2:210544000-210596600	Weak transcription	Ovary	ovary
4	chr2:210544400-210598600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:210552800-210599400	Weak transcription	Pancreas	Pancrea
6	chr2:210555600-210600200	Weak transcription	Left Ventricle	heart
7	chr2:210558000-210598600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:210562400-210593600	Weak transcription	Fetal Brain Male	brain
9	chr2:210571800-210598600	Weak transcription	Brain Substantia Nigra	brain
10	chr2:210581000-210600600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:210585000-210600000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:210586600-210599600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:210586800-210595400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr2:210586800-210599800	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:210588800-210599400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:210589400-210593400	Weak transcription	Aorta	Aorta
17	chr2:210589600-210600800	Weak transcription	Brain Angular Gyrus	brain
18	chr2:210589800-210593200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:210590600-210596600	Weak transcription	Brain Anterior Caudate	brain
20	chr2:210591200-210596600	Weak transcription	Brain Germinal Matrix	brain
21	chr2:210591800-210599200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:210592000-210599000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:210592400-210596800	Weak transcription	Fetal Brain Female	brain
24	chr2:210592600-210595400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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