Variant report

Variant	rs10189639
Chromosome Location	chr2:210512893-210512894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10174634	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10179388	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10189166	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10196953	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10197252	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12328955	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13383482	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs13384979	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13392785	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13399574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13428159	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16843513	0.81[EUR][1000 genomes]
rs16843555	0.81[EUR][1000 genomes]
rs17745550	0.81[EUR][1000 genomes]
rs4392185	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55677311	0.81[EUR][1000 genomes]
rs55888621	0.81[EUR][1000 genomes]
rs6435535	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6716675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6751280	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73072898	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73074703	0.81[EUR][1000 genomes]
rs73074704	0.81[EUR][1000 genomes]
rs73074714	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73074716	0.81[EUR][1000 genomes]
rs73074718	0.81[EUR][1000 genomes]
rs73074722	0.81[EUR][1000 genomes]
rs73074726	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73074728	0.81[EUR][1000 genomes]
rs7577387	0.81[EUR][1000 genomes]
rs7603804	0.80[AMR][1000 genomes]
rs877782	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
2	chr2:210501000-210517800	Weak transcription	Fetal Brain Female	brain
3	chr2:210501200-210516200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:210501800-210517800	Weak transcription	Brain Germinal Matrix	brain
5	chr2:210503600-210517800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:210507800-210517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:210507800-210525800	Weak transcription	NH-A	brain
8	chr2:210508000-210513200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:210508000-210519000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:210508000-210527800	Weak transcription	HUVEC	blood vessel
11	chr2:210508400-210527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:210509400-210515800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:210509600-210517800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:210510400-210513200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:210511400-210513400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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