Variant report

Variant	rs10179388
Chromosome Location	chr2:210459451-210459452
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10048829	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10174634	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10189166	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10189639	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10196953	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes]
rs10197252	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs11897507	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11899684	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11901333	0.84[YRI][hapmap];0.91[AMR][1000 genomes]
rs12328955	0.80[AMR][1000 genomes]
rs12619473	1.00[CEU][hapmap]
rs13383482	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13384979	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13392785	1.00[CEU][hapmap]
rs13394033	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13399574	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1509472	1.00[CEU][hapmap]
rs16843062	0.85[EUR][1000 genomes]
rs16843177	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs16843513	1.00[CEU][hapmap]
rs16843555	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap]
rs17238784	1.00[GIH][hapmap];0.90[TSI][hapmap]
rs17239083	0.81[EUR][1000 genomes]
rs17308504	1.00[GIH][hapmap]
rs17317100	1.00[CEU][hapmap]
rs17317756	0.81[EUR][1000 genomes]
rs17745550	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs288095	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6435535	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs6716675	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6751280	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs73072898	0.90[AMR][1000 genomes]
rs73074714	0.90[AMR][1000 genomes]
rs73074726	0.90[AMR][1000 genomes]
rs7577387	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7603804	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs877782	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336895	chr2:210457557-210459655	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210443600-210461000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:210446600-210461600	Weak transcription	Brain Angular Gyrus	brain
3	chr2:210447800-210460400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:210456400-210464400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:210457000-210465200	Weak transcription	Fetal Brain Female	brain
6	chr2:210457000-210465400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:210457400-210460400	Weak transcription	Left Ventricle	heart
8	chr2:210457400-210463200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:210457400-210465000	Weak transcription	Brain Germinal Matrix	brain
10	chr2:210458800-210460000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:210458800-210463200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:210459000-210463000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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