Variant report

Variant	rs17317756
Chromosome Location	chr2:210387835-210387836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10179388	0.81[EUR][1000 genomes]
rs13383482	0.89[EUR][1000 genomes]
rs13394033	0.89[EUR][1000 genomes]
rs16843062	0.96[EUR][1000 genomes]
rs16843177	0.96[EUR][1000 genomes]
rs17237076	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17238784	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17239083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17308504	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17309028	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17309518	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17316313	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17317645	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs288095	0.96[EUR][1000 genomes]
rs58195909	0.92[EUR][1000 genomes]
rs59649490	0.92[EUR][1000 genomes]
rs59999353	0.92[EUR][1000 genomes]
rs60457662	0.92[EUR][1000 genomes]
rs73067004	0.92[EUR][1000 genomes]
rs73069087	0.92[EUR][1000 genomes]
rs73069088	0.92[EUR][1000 genomes]
rs73069096	0.92[EUR][1000 genomes]
rs7603804	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea
2	chr2:210371400-210391000	Weak transcription	Aorta	Aorta
3	chr2:210378800-210390200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:210382200-210391600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:210383000-210391000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210384000-210388600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210386200-210388200	Weak transcription	HUVEC	blood vessel
8	chr2:210386600-210388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:210386800-210389600	Enhancers	Fetal Brain Male	brain
10	chr2:210387000-210389000	Enhancers	Fetal Brain Female	brain
11	chr2:210387000-210391600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:210387200-210389800	Enhancers	Brain Germinal Matrix	brain
13	chr2:210387600-210388200	Enhancers	NH-A	brain
14	chr2:210387600-210388800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:210387800-210388000	Enhancers	Brain Angular Gyrus	brain
16	chr2:210387800-210388000	Enhancers	Fetal Stomach	stomach
17	chr2:210387800-210388200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:210387800-210388400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:210387800-210388400	Enhancers	Brain Cingulate Gyrus	brain
20	chr2:210387800-210388800	Enhancers	NHDF-Ad	bronchial
21	chr2:210387800-210392600	Enhancers	Primary B cells from peripheral blood	blood

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