Variant report

Variant	rs13384979
Chromosome Location	chr2:210501042-210501043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10048829	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10174634	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10179388	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10189166	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10189639	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10196953	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10197252	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11897507	0.96[EUR][1000 genomes]
rs11899684	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11901333	0.84[YRI][hapmap]
rs12328955	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12619473	1.00[CEU][hapmap]
rs13383482	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13392785	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13394033	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13399574	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13428159	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1509472	1.00[CEU][hapmap]
rs16843177	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs16843513	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16843555	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs17238784	1.00[GIH][hapmap];0.90[TSI][hapmap]
rs17308504	1.00[GIH][hapmap]
rs17317100	1.00[CEU][hapmap]
rs17745550	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs288095	1.00[CEU][hapmap]
rs4392185	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55677311	0.85[EUR][1000 genomes]
rs55888621	0.85[EUR][1000 genomes]
rs6435535	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6716675	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6751280	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73072898	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73074703	0.85[EUR][1000 genomes]
rs73074704	0.85[EUR][1000 genomes]
rs73074714	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73074716	0.85[EUR][1000 genomes]
rs73074718	0.85[EUR][1000 genomes]
rs73074722	0.85[EUR][1000 genomes]
rs73074726	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73074728	0.85[EUR][1000 genomes]
rs7577387	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs7603804	1.00[CEU][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes]
rs877782	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
2	chr2:210496200-210506800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:210496200-210507000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210496400-210502200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:210498800-210501200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210499600-210501800	Enhancers	Brain Germinal Matrix	brain
7	chr2:210499800-210501400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:210500000-210501200	Enhancers	Brain Angular Gyrus	brain
9	chr2:210500200-210501200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210500200-210501200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:210500200-210501200	Enhancers	Fetal Brain Male	brain
12	chr2:210500400-210501200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:210500400-210501200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:210500400-210501200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:210500400-210501200	Enhancers	Brain Anterior Caudate	brain
16	chr2:210500400-210501200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr2:210500600-210501200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:210500600-210501200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr2:210500600-210501200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:210500600-210501200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:210500600-210501200	Enhancers	Brain Substantia Nigra	brain
22	chr2:210500600-210501800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:210500800-210501200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:210500800-210501200	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr2:210500800-210501200	Enhancers	HMEC	breast
26	chr2:210500800-210501200	Enhancers	NHEK	skin
27	chr2:210501000-210501200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:210501000-210501200	Enhancers	NH-A	brain
29	chr2:210501000-210501600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:210501000-210517800	Weak transcription	Fetal Brain Female	brain

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