Variant report

Variant	rs55677311
Chromosome Location	chr2:210597800-210597801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10048829	0.81[EUR][1000 genomes]
rs10189166	0.92[EUR][1000 genomes]
rs10189639	0.81[EUR][1000 genomes]
rs10196953	1.00[EUR][1000 genomes]
rs10197252	1.00[EUR][1000 genomes]
rs11897507	0.81[EUR][1000 genomes]
rs11899684	0.81[EUR][1000 genomes]
rs12328955	1.00[EUR][1000 genomes]
rs13383482	0.81[EUR][1000 genomes]
rs13384979	0.85[EUR][1000 genomes]
rs13392785	1.00[EUR][1000 genomes]
rs13394033	0.81[EUR][1000 genomes]
rs13399574	0.85[EUR][1000 genomes]
rs13428159	1.00[EUR][1000 genomes]
rs16843177	0.85[AMR][1000 genomes]
rs16843513	1.00[EUR][1000 genomes]
rs16843555	1.00[EUR][1000 genomes]
rs17745550	1.00[EUR][1000 genomes]
rs4392185	1.00[EUR][1000 genomes]
rs55888621	1.00[EUR][1000 genomes]
rs6435535	1.00[EUR][1000 genomes]
rs6716675	0.92[EUR][1000 genomes]
rs6751280	1.00[EUR][1000 genomes]
rs73072898	1.00[EUR][1000 genomes]
rs73074703	1.00[EUR][1000 genomes]
rs73074704	1.00[EUR][1000 genomes]
rs73074714	1.00[EUR][1000 genomes]
rs73074716	1.00[EUR][1000 genomes]
rs73074718	1.00[EUR][1000 genomes]
rs73074722	1.00[EUR][1000 genomes]
rs73074726	1.00[EUR][1000 genomes]
rs73074728	1.00[EUR][1000 genomes]
rs7577387	1.00[EUR][1000 genomes]
rs877782	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210544400-210598600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:210552800-210599400	Weak transcription	Pancreas	Pancrea
3	chr2:210555600-210600200	Weak transcription	Left Ventricle	heart
4	chr2:210558000-210598600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:210571800-210598600	Weak transcription	Brain Substantia Nigra	brain
6	chr2:210581000-210600600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:210585000-210600000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:210586600-210599600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:210586800-210599800	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:210588800-210599400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:210589600-210600800	Weak transcription	Brain Angular Gyrus	brain
12	chr2:210591800-210599200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:210592000-210599000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:210595200-210601400	Weak transcription	Aorta	Aorta
15	chr2:210595800-210602200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr2:210596600-210598200	Strong transcription	Brain Germinal Matrix	brain
17	chr2:210596800-210598200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:210596800-210598400	Strong transcription	Fetal Brain Female	brain
19	chr2:210597800-210598200	Enhancers	H9 Cell Line	embryonic stem cell

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