Variant report

Variant	rs17348492
Chromosome Location	chr5:60935451-60935452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10053221	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10073941	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1354138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910026	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs57300882	0.81[ASN][1000 genomes]
rs62365020	0.81[ASN][1000 genomes]
rs6861818	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60933000-60935800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:60933000-60936000	Enhancers	Hela-S3	cervix
4	chr5:60933000-60937000	Enhancers	Adipose Nuclei	Adipose
5	chr5:60933400-60936400	Enhancers	Fetal Muscle Leg	muscle
6	chr5:60933600-60936200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:60933800-60936200	Weak transcription	HMEC	breast
8	chr5:60933800-60936200	Weak transcription	NHEK	skin
9	chr5:60934400-60935600	Enhancers	Placenta	Placenta
10	chr5:60934600-60935800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:60934600-60936000	Weak transcription	A549	lung
12	chr5:60934600-60936600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:60934600-60937600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:60934600-60938000	Enhancers	Brain Cingulate Gyrus	brain
15	chr5:60934600-60938000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:60934600-60938400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:60934600-60938400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr5:60934800-60935600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:60934800-60936000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr5:60934800-60936400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:60934800-60936800	Weak transcription	Right Atrium	heart
22	chr5:60934800-60938000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:60934800-60938200	Weak transcription	Fetal Heart	heart
24	chr5:60934800-60938400	Enhancers	Brain Anterior Caudate	brain
25	chr5:60934800-60938800	Enhancers	Brain Substantia Nigra	brain
26	chr5:60934800-60939200	Enhancers	Brain Hippocampus Middle	brain
27	chr5:60934800-60940000	Weak transcription	Pancreas	Pancrea
28	chr5:60935000-60935600	Weak transcription	Brain Angular Gyrus	brain
29	chr5:60935400-60938200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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