Variant report

Variant	rs1354138
Chromosome Location	chr5:60933255-60933256
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10053221	0.92[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10073941	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11951156	0.80[AFR][1000 genomes]
rs17348492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910026	0.88[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap]
rs4413488	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs56241055	0.81[ASN][1000 genomes]
rs57300882	0.87[AFR][1000 genomes]
rs62365020	0.89[AFR][1000 genomes]
rs6449539	0.81[ASN][1000 genomes]
rs6861818	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6871345	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6883945	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7727255	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1354138	FLJ37543	cis	parietal	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60927600-60933600	Enhancers	Brain Substantia Nigra	brain
2	chr5:60928000-60933400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:60928200-60933400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:60928200-60933600	Enhancers	Brain Cingulate Gyrus	brain
5	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:60928600-60933800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:60928800-60933400	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:60929400-60933600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:60929800-60934400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:60930000-60933600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr5:60930400-60933800	Weak transcription	Aorta	Aorta
12	chr5:60930600-60933600	Enhancers	Brain Anterior Caudate	brain
13	chr5:60931200-60933600	Enhancers	Brain Angular Gyrus	brain
14	chr5:60932200-60934600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:60932200-60935000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:60932400-60933400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:60932400-60933600	Enhancers	Brain Hippocampus Middle	brain
18	chr5:60932600-60934600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:60932800-60933800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr5:60932800-60934000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr5:60932800-60934000	Weak transcription	Right Atrium	heart
22	chr5:60932800-60934600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:60932800-60934800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:60932800-60934800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr5:60933000-60934000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr5:60933000-60934200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr5:60933000-60934800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:60933000-60935800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr5:60933000-60936000	Enhancers	Hela-S3	cervix
30	chr5:60933000-60937000	Enhancers	Adipose Nuclei	Adipose
31	chr5:60933200-60934000	Enhancers	HUES64 Cell Line	embryonic stem cell

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