Variant report

Variant	rs7727255
Chromosome Location	chr5:60928329-60928330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60626093..60627678-chr5:60926976..60929648,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10053221	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073941	0.83[ASN][1000 genomes]
rs11951145	0.95[ASN][1000 genomes]
rs11951156	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1354138	0.96[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.81[ASN][1000 genomes]
rs17348492	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1910026	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.98[ASN][1000 genomes]
rs4413488	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56241055	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57300882	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62365015	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62365020	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6449539	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861818	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6871345	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883945	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7727255	FLJ37543	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60923400-60931000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:60926600-60929200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:60926600-60929400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:60927200-60928400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr5:60927200-60928400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:60927200-60928400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:60927200-60928400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:60927200-60928400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:60927200-60928600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:60927200-60928600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:60927200-60928600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:60927200-60928800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:60927200-60928800	Enhancers	Fetal Muscle Leg	muscle
14	chr5:60927400-60928400	Enhancers	Right Atrium	heart
15	chr5:60927600-60928400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr5:60927600-60929000	Enhancers	Brain Angular Gyrus	brain
17	chr5:60927600-60933600	Enhancers	Brain Substantia Nigra	brain
18	chr5:60927800-60928400	Enhancers	Adipose Nuclei	Adipose
19	chr5:60927800-60928800	Enhancers	NH-A	brain
20	chr5:60927800-60929200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr5:60927800-60929400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:60927800-60929400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:60927800-60930200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr5:60927800-60931400	Weak transcription	HUVEC	blood vessel
25	chr5:60927800-60931600	Enhancers	Brain Hippocampus Middle	brain
26	chr5:60928000-60928400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr5:60928000-60928600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr5:60928000-60929200	Enhancers	Brain Anterior Caudate	brain
29	chr5:60928000-60929400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:60928000-60929600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr5:60928000-60933400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr5:60928200-60928800	Enhancers	H9 Cell Line	embryonic stem cell
33	chr5:60928200-60929800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr5:60928200-60930200	Weak transcription	Aorta	Aorta
35	chr5:60928200-60932000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:60928200-60932800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr5:60928200-60933400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr5:60928200-60933600	Enhancers	Brain Cingulate Gyrus	brain

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