Variant report

Variant	rs11951156
Chromosome Location	chr5:60921861-60921862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10053221	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10073941	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11951145	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1354138	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes]
rs17348492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1910026	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4413488	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56241055	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56300029	0.81[EUR][1000 genomes]
rs57300882	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62365015	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62365020	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6449539	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6861818	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6871345	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6883945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7727255	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60920600-60922600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr5:60920800-60922400	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr5:60920800-60923000	Flanking Active TSS	Brain Hippocampus Middle	brain
4	chr5:60921000-60922000	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr5:60921000-60922000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr5:60921000-60922000	Active TSS	NHDF-Ad	bronchial
7	chr5:60921000-60922200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:60921000-60922400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:60921000-60922400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:60921000-60922400	Enhancers	Fetal Brain Male	brain
11	chr5:60921000-60922400	Active TSS	Fetal Kidney	kidney
12	chr5:60921000-60922600	Active TSS	H9 Cell Line	embryonic stem cell
13	chr5:60921000-60922600	Active TSS	Right Atrium	heart
14	chr5:60921000-60922800	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr5:60921000-60923200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:60921200-60922000	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:60921200-60922000	Active TSS	Fetal Lung	lung
18	chr5:60921200-60922000	Flanking Active TSS	HMEC	breast
19	chr5:60921200-60922000	Flanking Active TSS	HUVEC	blood vessel
20	chr5:60921200-60922200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
21	chr5:60921200-60922200	Active TSS	Ovary	ovary
22	chr5:60921200-60922200	Active TSS	A549	lung
23	chr5:60921200-60922400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr5:60921200-60922400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:60921200-60922400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr5:60921200-60922400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:60921200-60922400	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr5:60921200-60922400	Active TSS	Left Ventricle	heart
29	chr5:60921200-60922400	Active TSS	Lung	lung
30	chr5:60921200-60922400	Active TSS	Pancreas	Pancrea
31	chr5:60921200-60922400	Active TSS	Placenta Amnion	Placenta Amnion
32	chr5:60921200-60922400	Active TSS	Psoas Muscle	Psoas
33	chr5:60921200-60922400	Active TSS	Right Ventricle	heart
34	chr5:60921200-60922400	Active TSS	NHLF	lung
35	chr5:60921200-60922600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr5:60921200-60922600	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr5:60921200-60922600	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr5:60921200-60922600	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr5:60921200-60922600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr5:60921200-60922600	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr5:60921200-60922600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:60921200-60922600	Active TSS	Brain Angular Gyrus	brain
43	chr5:60921200-60922600	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr5:60921200-60922600	Flanking Active TSS	Fetal Muscle Trunk	muscle
45	chr5:60921200-60922800	Flanking Active TSS	Primary B cells from cord blood	blood
46	chr5:60921200-60922800	Active TSS	Primary T cells from cord blood	blood
47	chr5:60921400-60922000	Bivalent/Poised TSS	HepG2	liver
48	chr5:60921400-60922000	Bivalent/Poised TSS	HSMMtube	muscle
49	chr5:60921400-60922200	Active TSS	H1 Cell Line	embryonic stem cell
50	chr5:60921400-60922200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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