Variant report

Variant	rs62365020
Chromosome Location	chr5:60932673-60932674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10053221	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10073941	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11951145	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11951156	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1354138	0.89[AFR][1000 genomes]
rs17348492	0.81[ASN][1000 genomes]
rs1910026	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413488	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56241055	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56300029	0.81[EUR][1000 genomes]
rs57300882	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62365015	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6449539	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6861818	0.98[ASN][1000 genomes]
rs6871345	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6883945	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7727255	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60927600-60933600	Enhancers	Brain Substantia Nigra	brain
2	chr5:60928000-60933400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:60928200-60932800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:60928200-60933400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:60928200-60933600	Enhancers	Brain Cingulate Gyrus	brain
6	chr5:60928400-60933000	Weak transcription	Adipose Nuclei	Adipose
7	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:60928600-60932800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:60928600-60933200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:60928600-60933800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:60928800-60933000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:60928800-60933400	Weak transcription	Fetal Muscle Leg	muscle
13	chr5:60929200-60932800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:60929400-60933000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:60929400-60933600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:60929800-60934400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:60930000-60933600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr5:60930400-60933800	Weak transcription	Aorta	Aorta
19	chr5:60930600-60933600	Enhancers	Brain Anterior Caudate	brain
20	chr5:60930800-60933200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:60931200-60933600	Enhancers	Brain Angular Gyrus	brain
22	chr5:60931400-60932800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:60931400-60932800	Enhancers	Placenta Amnion	Placenta Amnion
24	chr5:60932200-60934600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:60932200-60935000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:60932400-60933000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:60932400-60933400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:60932400-60933600	Enhancers	Brain Hippocampus Middle	brain
29	chr5:60932600-60934600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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