Variant report

Variant	rs1910026
Chromosome Location	chr5:60930584-60930585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10053221	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10073941	0.85[ASN][1000 genomes]
rs11951145	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11951156	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1354138	0.88[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap]
rs17348492	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4413488	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56241055	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56300029	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57300882	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62365015	0.85[ASN][1000 genomes]
rs62365020	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6449539	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6861818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6871345	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6883945	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7727255	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521793	chr5:60930305-60930584	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1910026	FLJ37543	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60923400-60931000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:60927600-60933600	Enhancers	Brain Substantia Nigra	brain
3	chr5:60927800-60931400	Weak transcription	HUVEC	blood vessel
4	chr5:60927800-60931600	Enhancers	Brain Hippocampus Middle	brain
5	chr5:60928000-60933400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:60928200-60932000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:60928200-60932800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:60928200-60933400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:60928200-60933600	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:60928400-60933000	Weak transcription	Adipose Nuclei	Adipose
11	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:60928600-60932800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:60928600-60933200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:60928600-60933800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:60928800-60933000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:60928800-60933400	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:60929000-60930600	Weak transcription	Brain Angular Gyrus	brain
18	chr5:60929200-60930600	Weak transcription	Brain Anterior Caudate	brain
19	chr5:60929200-60931000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:60929200-60932800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr5:60929400-60931600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:60929400-60932200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:60929400-60933000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr5:60929400-60933600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:60929800-60934400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:60930000-60933600	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr5:60930400-60932200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:60930400-60933800	Weak transcription	Aorta	Aorta

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