Variant report

Variant	rs62365015
Chromosome Location	chr5:60926299-60926300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10053221	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10073941	0.80[ASN][1000 genomes]
rs11951145	0.84[ASN][1000 genomes]
rs11951156	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1910026	0.85[ASN][1000 genomes]
rs4413488	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56241055	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57300882	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62365020	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6449539	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6861818	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6871345	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6883945	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7727255	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60921800-60927200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:60922000-60926600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:60922000-60927000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:60922000-60927200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:60922400-60927200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:60922400-60927400	Weak transcription	Fetal Brain Male	brain
7	chr5:60922400-60927400	Weak transcription	NHLF	lung
8	chr5:60922600-60927400	Weak transcription	Aorta	Aorta
9	chr5:60922800-60926600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:60922800-60926800	Weak transcription	Fetal Heart	heart
11	chr5:60922800-60926800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:60922800-60927000	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:60922800-60927000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:60922800-60927200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:60922800-60927200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:60922800-60927200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr5:60922800-60927200	Weak transcription	Fetal Stomach	stomach
18	chr5:60922800-60927200	Weak transcription	Left Ventricle	heart
19	chr5:60922800-60927200	Weak transcription	Psoas Muscle	Psoas
20	chr5:60922800-60927200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr5:60922800-60927200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr5:60922800-60927400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:60922800-60927400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:60922800-60927400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:60922800-60927600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr5:60923000-60926600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr5:60923000-60926600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:60923000-60926800	Weak transcription	Brain Angular Gyrus	brain
29	chr5:60923000-60927000	Weak transcription	Adipose Nuclei	Adipose
30	chr5:60923000-60927000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr5:60923000-60927200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr5:60923000-60927200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:60923000-60927200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr5:60923000-60927200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr5:60923000-60927200	Weak transcription	Fetal Muscle Leg	muscle
36	chr5:60923000-60927200	Weak transcription	Lung	lung
37	chr5:60923000-60927400	Weak transcription	Right Ventricle	heart
38	chr5:60923400-60931000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:60923600-60926800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr5:60923800-60926600	Weak transcription	Brain Anterior Caudate	brain
41	chr5:60923800-60926600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr5:60923800-60926600	Weak transcription	Brain Substantia Nigra	brain
43	chr5:60924000-60926600	Weak transcription	Brain Hippocampus Middle	brain

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