Variant report

Variant	rs10073941
Chromosome Location	chr5:60934459-60934460
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10053221	0.83[ASN][1000 genomes]
rs11951156	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1354138	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17348492	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1910026	0.85[ASN][1000 genomes]
rs4413488	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56241055	0.83[ASN][1000 genomes]
rs57300882	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62365015	0.80[ASN][1000 genomes]
rs62365020	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6449539	0.83[ASN][1000 genomes]
rs6861818	0.83[ASN][1000 genomes]
rs6871345	0.83[ASN][1000 genomes]
rs6883945	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7727255	0.83[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60932200-60934600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:60932200-60935000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:60932600-60934600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:60932800-60934600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:60932800-60934800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:60932800-60934800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:60933000-60934800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:60933000-60935800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:60933000-60936000	Enhancers	Hela-S3	cervix
11	chr5:60933000-60937000	Enhancers	Adipose Nuclei	Adipose
12	chr5:60933400-60934600	Enhancers	Stomach Smooth Muscle	stomach
13	chr5:60933400-60934600	Enhancers	A549	lung
14	chr5:60933400-60936400	Enhancers	Fetal Muscle Leg	muscle
15	chr5:60933600-60934600	Flanking Active TSS	Brain Angular Gyrus	brain
16	chr5:60933600-60934600	Flanking Active TSS	Brain Cingulate Gyrus	brain
17	chr5:60933600-60934800	Flanking Active TSS	Brain Anterior Caudate	brain
18	chr5:60933600-60934800	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr5:60933600-60934800	Flanking Active TSS	Brain Substantia Nigra	brain
20	chr5:60933600-60936200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:60933800-60934600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:60933800-60934600	Enhancers	Right Ventricle	heart
23	chr5:60933800-60934800	Enhancers	Left Ventricle	heart
24	chr5:60933800-60934800	Enhancers	Lung	lung
25	chr5:60933800-60936200	Weak transcription	HMEC	breast
26	chr5:60933800-60936200	Weak transcription	NHEK	skin
27	chr5:60934000-60934800	Enhancers	Fetal Muscle Trunk	muscle
28	chr5:60934000-60934800	Enhancers	Right Atrium	heart
29	chr5:60934200-60934600	Enhancers	Liver	Liver
30	chr5:60934200-60934600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
31	chr5:60934200-60934600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr5:60934200-60934600	Enhancers	HSMMtube	muscle
33	chr5:60934400-60934600	Enhancers	Placenta Amnion	Placenta Amnion
34	chr5:60934400-60934800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:60934400-60934800	Enhancers	Fetal Heart	heart
36	chr5:60934400-60934800	Enhancers	Pancreas	Pancrea
37	chr5:60934400-60935600	Enhancers	Placenta	Placenta

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