Variant report

Variant	rs17362901
Chromosome Location	chr12:26195771-26195772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10219479	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10734752	0.84[ASN][1000 genomes]
rs11048395	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11048396	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12300961	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12304275	0.91[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12308128	0.90[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12314388	0.88[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16929960	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17354107	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17354204	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17354478	0.82[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17361182	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17361755	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17362314	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17362453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17362593	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17362614	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17458637	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17459432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17459771	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17459910	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17460800	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1996091	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4963645	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4963944	0.81[JPT][hapmap]
rs4963945	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4963948	0.91[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4963949	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4963950	0.98[ASN][1000 genomes]
rs55965624	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56051193	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56169892	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56228589	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56399330	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58178281	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73074880	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73074882	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73074895	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73077109	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73077123	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73077138	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73077155	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73077158	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73079015	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079022	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73079027	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73079032	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73079036	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73079055	0.91[AMR][1000 genomes]
rs73079059	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7486150	0.88[CHB][hapmap];0.83[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
3	chr12:26187200-26195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr12:26187200-26196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:26191000-26196000	Weak transcription	Ovary	ovary
7	chr12:26191400-26195800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:26191400-26196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:26192400-26195800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:26192400-26195800	Weak transcription	Psoas Muscle	Psoas
11	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:26192400-26196000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:26193600-26195800	Weak transcription	Aorta	Aorta
16	chr12:26193600-26195800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:26193600-26196000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr12:26193600-26196000	Weak transcription	Brain Angular Gyrus	brain
19	chr12:26193600-26196000	Weak transcription	Brain Substantia Nigra	brain
20	chr12:26193600-26196000	Weak transcription	Lung	lung
21	chr12:26193600-26196200	Weak transcription	Right Atrium	heart
22	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
23	chr12:26194400-26196800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:26194600-26196400	Enhancers	Osteobl	bone
25	chr12:26194600-26196800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:26194600-26199000	Enhancers	NHDF-Ad	bronchial
27	chr12:26194800-26196400	Enhancers	Hela-S3	cervix
28	chr12:26194800-26196600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr12:26194800-26196600	Enhancers	NHLF	lung
30	chr12:26194800-26197200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr12:26194800-26198600	Enhancers	NH-A	brain
32	chr12:26194800-26199000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr12:26195000-26196000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr12:26195000-26196000	Enhancers	Brain Anterior Caudate	brain
35	chr12:26195000-26196200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr12:26195000-26196800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr12:26195000-26197000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr12:26195000-26197000	Enhancers	Stomach Smooth Muscle	stomach
39	chr12:26195000-26197000	Enhancers	A549	lung
40	chr12:26195000-26197200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr12:26195000-26197200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:26195000-26197200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr12:26195000-26197200	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr12:26195000-26197200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr12:26195000-26197600	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr12:26195000-26197600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr12:26195200-26195800	Enhancers	Brain Hippocampus Middle	brain
48	chr12:26195200-26195800	Weak transcription	Fetal Stomach	stomach
49	chr12:26195200-26196400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr12:26195200-26196400	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links