Variant report

Variant	rs73077158
Chromosome Location	chr12:26156584-26156585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10219479	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11048395	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11048396	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12300961	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12304275	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12308128	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12314388	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16929960	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17354107	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17354204	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17354478	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17361182	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17361755	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17362314	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17362453	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17362593	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17362614	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17362901	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17458637	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17459432	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17459771	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17459910	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17460800	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1996091	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963645	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4963945	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4963948	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4963949	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963950	0.88[ASN][1000 genomes]
rs55965624	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56051193	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56169892	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56228589	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56369291	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56399330	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58178281	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73074880	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73074882	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73074895	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73077109	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73077123	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73077138	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73077155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73079015	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73079022	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73079027	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73079032	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73079036	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73079055	0.91[AMR][1000 genomes]
rs73079059	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7486150	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26139600-26160000	Weak transcription	Pancreas	Pancrea
2	chr12:26145600-26163000	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:26146200-26163000	Weak transcription	Lung	lung
4	chr12:26148000-26163600	Weak transcription	Aorta	Aorta
5	chr12:26148200-26157000	Weak transcription	Psoas Muscle	Psoas
6	chr12:26150800-26159600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:26150800-26160000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:26150800-26163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:26151000-26163000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:26151200-26160000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr12:26151400-26160400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr12:26151400-26162000	Weak transcription	Hela-S3	cervix
13	chr12:26152200-26162800	Weak transcription	HSMM	muscle
14	chr12:26152800-26157400	Strong transcription	NHDF-Ad	bronchial
15	chr12:26154400-26156600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:26154600-26156600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr12:26154800-26157400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr12:26154800-26157800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr12:26154800-26163400	Weak transcription	HSMMtube	muscle
20	chr12:26155000-26159400	Weak transcription	Colon Smooth Muscle	Colon
21	chr12:26155600-26156600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:26155600-26156600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:26155600-26156600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr12:26155600-26156600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr12:26155600-26156600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:26155600-26156600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
27	chr12:26155600-26156600	ZNF genes & repeats	NH-A	brain
28	chr12:26155800-26156600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr12:26155800-26159800	Weak transcription	Left Ventricle	heart
30	chr12:26155800-26163200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:26156000-26156600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr12:26156000-26159600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr12:26156000-26160200	Weak transcription	Fetal Stomach	stomach
34	chr12:26156000-26162800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr12:26156200-26161800	Weak transcription	Fetal Lung	lung
36	chr12:26156200-26163000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr12:26156400-26158000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr12:26156400-26158800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:26156400-26159800	Weak transcription	Fetal Heart	heart
40	chr12:26156400-26160000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr12:26156400-26160200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr12:26156400-26160200	Weak transcription	Fetal Intestine Large	intestine
43	chr12:26156400-26160200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr12:26156400-26161600	Weak transcription	Brain Anterior Caudate	brain
45	chr12:26156400-26161800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr12:26156400-26161800	Weak transcription	Osteobl	bone
47	chr12:26156400-26162400	Weak transcription	Ovary	ovary
48	chr12:26156400-26162600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr12:26156400-26162600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr12:26156400-26163000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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