Variant report

Variant	rs55965624
Chromosome Location	chr12:26200621-26200622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr12:26200539-26201102	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr12:26200533-26201024	H1-hESC	embryonic stem cell:	n/a	n/a
3	RXRA	chr12:26200574-26200897	H1-hESC	embryonic stem cell:	n/a	n/a
4	RAD21	chr12:26200540-26201044	H1-hESC	embryonic stem cell:	n/a	chr12:26200547-26200560
5	TCF12	chr12:26200573-26200925	H1-hESC	embryonic stem cell:	n/a	n/a
6	MAX	chr12:26200576-26200941	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr12:26200564-26200904	H1-hESC	embryonic stem cell:	n/a	n/a
8	CREB1	chr12:26200556-26201029	H1-hESC	embryonic stem cell:	n/a	n/a
9	JUND	chr12:26200583-26201072	H1-hESC	embryonic stem cell:	n/a	n/a
10	TCF12	chr12:26200475-26200832	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTBP2	chr12:26200585-26200962	H1-hESC	embryonic stem cell:	n/a	n/a
12	YY1	chr12:26200548-26200906	H1-hESC	embryonic stem cell:	n/a	n/a
13	JUND	chr12:26200608-26200856	H1-hESC	embryonic stem cell:	n/a	n/a
14	CTCF	chr12:26200580-26201009	H1-hESC	embryonic stem cell:	n/a	n/a
15	NANOG	chr12:26200545-26200891	H1-hESC	embryonic stem cell:	n/a	n/a
16	TEAD4	chr12:26200601-26200998	H1-hESC	embryonic stem cell:	n/a	n/a
17	RAD21	chr12:26200561-26200936	H1-hESC	embryonic stem cell:	n/a	n/a
18	HDAC2	chr12:26200519-26200914	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26200605..26203290-chr12:26207731..26209424,2	MCF-7	breast:

No data

Variant related genes	Relation type
RASSF8	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10219479	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10734752	0.80[ASN][1000 genomes]
rs11048395	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11048396	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12300961	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12304275	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12308128	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12314388	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16929960	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17354107	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17354204	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17354478	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17361182	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17361755	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17362314	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17362453	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17362593	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17362614	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17362901	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17458637	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17459432	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17459771	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17459910	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17460800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1996091	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4963645	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4963945	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4963948	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4963949	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4963950	0.94[ASN][1000 genomes]
rs56051193	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56169892	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56228589	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56369291	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs56399330	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58178281	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074880	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73074882	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73074895	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73077109	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73077123	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73077138	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73077155	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73077158	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079015	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73079022	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079027	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079032	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079036	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079055	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73079059	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7486150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26195200-26201200	Enhancers	Colon Smooth Muscle	Colon
3	chr12:26196200-26208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:26196400-26201000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
6	chr12:26196800-26200800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:26196800-26201400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:26197000-26201600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:26197000-26208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:26197200-26206000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:26197200-26209400	Weak transcription	NHLF	lung
12	chr12:26197200-26211800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
14	chr12:26197600-26209200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr12:26197800-26201400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:26197800-26209000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:26198000-26200800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:26198800-26200800	Weak transcription	Osteobl	bone
19	chr12:26199000-26200800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr12:26199200-26220200	Weak transcription	Brain Substantia Nigra	brain
21	chr12:26199400-26221600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr12:26199800-26200800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:26199800-26201600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr12:26200000-26200800	Enhancers	Stomach Smooth Muscle	stomach
25	chr12:26200000-26201000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr12:26200000-26201000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr12:26200000-26201400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr12:26200000-26205400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr12:26200000-26205800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr12:26200400-26200800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr12:26200400-26200800	Enhancers	Fetal Muscle Trunk	muscle
32	chr12:26200400-26200800	Enhancers	Lung	lung
33	chr12:26200400-26200800	Enhancers	Pancreas	Pancrea
34	chr12:26200400-26200800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr12:26200400-26201000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr12:26200400-26201000	Enhancers	Fetal Muscle Leg	muscle
37	chr12:26200400-26201000	Enhancers	Ovary	ovary
38	chr12:26200400-26201200	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr12:26200400-26201200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr12:26200400-26201400	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr12:26200400-26201400	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr12:26200400-26201400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr12:26200400-26201400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr12:26200400-26201600	Enhancers	Psoas Muscle	Psoas
45	chr12:26200400-26201600	Enhancers	Right Atrium	heart
46	chr12:26200600-26200800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr12:26200600-26200800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr12:26200600-26200800	Enhancers	Fetal Brain Male	brain
49	chr12:26200600-26201000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr12:26200600-26201000	Active TSS	iPS-20b Cell Line	embryonic stem cell

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