Variant report

Variant	rs58178281
Chromosome Location	chr12:26199756-26199757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10219479	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10734752	0.80[ASN][1000 genomes]
rs11048395	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11048396	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12300961	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12304275	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12308128	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12314388	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16929960	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17354107	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17354204	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17354478	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17361182	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17361755	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17362314	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17362453	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17362593	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17362614	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17362901	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17458637	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17459432	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17459771	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17459910	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17460800	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1996091	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4963645	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4963945	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4963948	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4963949	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4963950	0.94[ASN][1000 genomes]
rs55965624	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56051193	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56169892	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56228589	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56369291	0.80[ASN][1000 genomes]
rs56399330	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73074880	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73074882	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73074895	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73077109	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73077123	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73077138	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73077155	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73077158	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079015	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73079022	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079027	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079032	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079036	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73079055	0.91[AMR][1000 genomes]
rs73079059	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7486150	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
2	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
5	chr12:26195200-26201200	Enhancers	Colon Smooth Muscle	Colon
6	chr12:26195600-26200600	Weak transcription	HUVEC	blood vessel
7	chr12:26196200-26208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:26196400-26199800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:26196400-26200400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:26196400-26200400	Weak transcription	Fetal Muscle Leg	muscle
11	chr12:26196400-26200600	Weak transcription	Fetal Heart	heart
12	chr12:26196400-26201000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
14	chr12:26196600-26200400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:26196600-26200400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr12:26196600-26200400	Weak transcription	Lung	lung
17	chr12:26196600-26200600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr12:26196800-26199800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr12:26196800-26200400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:26196800-26200400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:26196800-26200800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr12:26196800-26201400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr12:26197000-26200000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr12:26197000-26200400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr12:26197000-26201600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr12:26197000-26208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr12:26197200-26199800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr12:26197200-26200000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr12:26197200-26200000	Enhancers	Brain Anterior Caudate	brain
30	chr12:26197200-26200000	Enhancers	Brain Hippocampus Middle	brain
31	chr12:26197200-26200400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr12:26197200-26200400	Weak transcription	Ovary	ovary
33	chr12:26197200-26200400	Weak transcription	Psoas Muscle	Psoas
34	chr12:26197200-26200400	Weak transcription	Right Atrium	heart
35	chr12:26197200-26200600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr12:26197200-26200600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr12:26197200-26200600	Weak transcription	Placenta	Placenta
38	chr12:26197200-26206000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr12:26197200-26209400	Weak transcription	NHLF	lung
40	chr12:26197200-26211800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
42	chr12:26197400-26200000	Weak transcription	Fetal Brain Male	brain
43	chr12:26197600-26200000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr12:26197600-26209200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr12:26197800-26201400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr12:26197800-26209000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr12:26198000-26200800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr12:26198600-26199800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr12:26198600-26200000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr12:26198600-26200600	Weak transcription	NH-A	brain

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