Variant report

Variant	rs17460800
Chromosome Location	chr12:26204696-26204697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10219479	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11048395	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11048396	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12300961	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12304275	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12308128	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12314388	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16929960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17354107	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17354204	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17354478	0.86[CEU][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17361182	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17361755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17362314	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17362453	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17362593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17362614	1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17362901	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17458637	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17459432	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17459771	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17459910	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1996091	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4963645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4963944	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4963945	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4963948	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4963949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4963950	0.92[ASN][1000 genomes]
rs55965624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56051193	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56169892	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56228589	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56369291	0.81[AMR][1000 genomes]
rs56399330	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58178281	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73074880	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73074882	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73074895	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73077109	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73077123	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73077138	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73077155	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73077158	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73079015	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73079022	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73079027	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73079032	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73079036	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73079055	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73079059	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7486150	1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26196200-26208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
4	chr12:26197000-26208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:26197200-26206000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:26197200-26209400	Weak transcription	NHLF	lung
7	chr12:26197200-26211800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
9	chr12:26197600-26209200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:26197800-26209000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:26199200-26220200	Weak transcription	Brain Substantia Nigra	brain
12	chr12:26199400-26221600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr12:26200000-26205400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr12:26200000-26205800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr12:26200600-26209200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:26200800-26206400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr12:26200800-26207400	Weak transcription	Pancreas	Pancrea
18	chr12:26200800-26208800	Weak transcription	Lung	lung
19	chr12:26200800-26209200	Weak transcription	Fetal Brain Male	brain
20	chr12:26200800-26229000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr12:26201000-26204800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr12:26201000-26205400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr12:26201000-26205400	Weak transcription	HUVEC	blood vessel
24	chr12:26201000-26205400	Weak transcription	NH-A	brain
25	chr12:26201000-26206400	Weak transcription	Ovary	ovary
26	chr12:26201000-26206600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr12:26201000-26207400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr12:26201000-26220800	Weak transcription	Left Ventricle	heart
29	chr12:26201000-26223400	Weak transcription	Fetal Muscle Leg	muscle
30	chr12:26201200-26205400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr12:26201200-26205400	Weak transcription	Colon Smooth Muscle	Colon
32	chr12:26201200-26206600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr12:26201200-26206600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr12:26201200-26210800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr12:26201400-26204800	Weak transcription	NHDF-Ad	bronchial
37	chr12:26201400-26205400	Weak transcription	Osteobl	bone
38	chr12:26201400-26206400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr12:26201400-26206400	Weak transcription	Fetal Heart	heart
40	chr12:26201400-26206600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr12:26201400-26206600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr12:26201400-26209600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr12:26201400-26221600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr12:26201600-26205000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr12:26201600-26205200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr12:26201600-26205600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr12:26201600-26206600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr12:26201600-26206600	Weak transcription	Right Atrium	heart
49	chr12:26201600-26215400	Weak transcription	Psoas Muscle	Psoas
50	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart

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