Variant report

Variant	rs17376294
Chromosome Location	chr1:193581076-193581077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10489939	0.88[ASN][1000 genomes]
rs1328190	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs17304406	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17304707	0.88[ASN][1000 genomes]
rs17304721	0.88[ASN][1000 genomes]
rs17304880	0.84[ASN][1000 genomes]
rs17376406	0.91[ASN][1000 genomes]
rs17376588	0.88[ASN][1000 genomes]
rs17376643	0.88[ASN][1000 genomes]
rs17376657	0.88[ASN][1000 genomes]
rs17376699	0.88[ASN][1000 genomes]
rs17376728	0.88[ASN][1000 genomes]
rs17376854	0.84[ASN][1000 genomes]
rs17376861	0.84[ASN][1000 genomes]
rs2031832	0.84[ASN][1000 genomes]
rs2039760	1.00[JPT][hapmap]
rs2039761	0.88[ASN][1000 genomes]
rs2039762	0.88[ASN][1000 genomes]
rs2039763	0.88[ASN][1000 genomes]
rs2039764	0.88[ASN][1000 genomes]
rs2149178	0.84[ASN][1000 genomes]
rs41409146	0.84[ASN][1000 genomes]
rs41533746	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs55874905	0.84[ASN][1000 genomes]
rs55950830	0.88[ASN][1000 genomes]
rs56003845	0.84[ASN][1000 genomes]
rs56106540	0.94[ASN][1000 genomes]
rs57049435	0.84[ASN][1000 genomes]
rs57730370	0.84[ASN][1000 genomes]
rs58874275	0.84[ASN][1000 genomes]
rs59209979	0.84[ASN][1000 genomes]
rs61242642	0.84[ASN][1000 genomes]
rs61831965	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs61831966	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs61831997	0.91[ASN][1000 genomes]
rs61832001	0.94[ASN][1000 genomes]
rs61832029	0.94[ASN][1000 genomes]
rs61832030	0.94[ASN][1000 genomes]
rs61833662	0.88[ASN][1000 genomes]
rs61833663	0.88[ASN][1000 genomes]
rs61833664	0.88[ASN][1000 genomes]
rs61833665	0.88[ASN][1000 genomes]
rs61833666	0.88[ASN][1000 genomes]
rs61833667	0.88[ASN][1000 genomes]
rs61833671	0.84[ASN][1000 genomes]
rs6659749	0.91[ASN][1000 genomes]
rs6671716	0.91[ASN][1000 genomes]
rs72728933	0.94[ASN][1000 genomes]
rs72728954	0.94[ASN][1000 genomes]
rs72728968	0.85[ASN][1000 genomes]
rs72744026	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9787078	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832170	chr1:193426455-193596182	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193579000-193583400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:193579400-193583600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:193579600-193584600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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