Variant report

Variant	rs17376588
Chromosome Location	chr1:193655428-193655429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10489939	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1328190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17304406	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17304707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17304721	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17304880	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17376294	0.88[ASN][1000 genomes]
rs17376406	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17376643	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376657	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376854	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17376861	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2031832	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2039760	1.00[JPT][hapmap]
rs2039761	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039762	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039763	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039764	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149178	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41409146	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41533746	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55874905	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55950830	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56003845	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56106540	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57049435	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57730370	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58874275	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59209979	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61242642	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61831965	0.85[ASN][1000 genomes]
rs61831966	0.85[ASN][1000 genomes]
rs61831997	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61832001	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61832029	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61832030	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61833662	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61833663	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61833664	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61833665	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61833666	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61833667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61833671	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6659749	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6671716	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72728933	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72728954	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72728968	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72744026	0.85[ASN][1000 genomes]
rs9787078	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34989	chr1:193630577-193710196	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2756877	chr1:193631528-193710196	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758986	chr1:193631528-193710196	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1012595	chr1:193648643-193682630	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193650400-193655800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:193654200-193656800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:193654200-193657200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:193654400-193656400	Enhancers	Primary hematopoietic stem cells	blood
5	chr1:193654400-193656800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links