Variant report

Variant	rs72744026
Chromosome Location	chr1:193584122-193584123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193583516..193586266-chr1:193590825..193592658,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10489939	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17304406	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17304707	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17304721	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17304880	0.82[ASN][1000 genomes]
rs17376294	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17376406	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17376588	0.85[ASN][1000 genomes]
rs17376643	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17376657	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17376699	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17376728	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17376854	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17376861	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17742496	0.83[AFR][1000 genomes]
rs2031832	0.82[ASN][1000 genomes]
rs2039761	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2039762	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2039763	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2039764	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2149178	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs41409146	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs41533746	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs55874905	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs55950830	0.85[ASN][1000 genomes]
rs56003845	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs56106540	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57049435	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs57730370	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs58874275	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs59209979	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs61242642	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs61831965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831966	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831997	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61832001	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61832029	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61832030	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61833662	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61833663	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61833664	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61833665	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61833666	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61833667	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61833671	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6659749	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6671716	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72728933	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72728954	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72728968	0.82[ASN][1000 genomes]
rs9787078	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832170	chr1:193426455-193596182	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193579600-193584600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:193583200-193584600	Enhancers	NHEK	skin
3	chr1:193583400-193584800	Enhancers	Hela-S3	cervix
4	chr1:193583600-193584800	Enhancers	HUVEC	blood vessel
5	chr1:193583800-193584200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:193584000-193584200	Enhancers	Colon Smooth Muscle	Colon
7	chr1:193584000-193584400	Flanking Active TSS	A549	lung
8	chr1:193584000-193584600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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