Variant report

Variant	rs6659749
Chromosome Location	chr1:193591852-193591853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193583516..193586266-chr1:193590825..193592658,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10489939	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17304406	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17304707	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17304721	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17304880	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17376294	0.91[ASN][1000 genomes]
rs17376406	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17376588	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17376643	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17376657	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17376699	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17376728	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17376854	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17376861	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2031832	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2039761	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2039762	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2039763	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2039764	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2149178	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41409146	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41533746	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55874905	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55950830	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56003845	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56106540	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57049435	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57730370	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58874275	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59209979	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61242642	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61831965	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61831966	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61831997	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61832001	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61832029	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61832030	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61833662	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61833663	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61833664	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61833665	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61833666	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61833667	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61833671	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6671716	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728933	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72728954	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72728968	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72744026	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9787078	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832170	chr1:193426455-193596182	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193586200-193603200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:193589400-193596600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:193591400-193593600	Weak transcription	Fetal Muscle Leg	muscle

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