Variant report

Variant	rs2031832
Chromosome Location	chr1:193695077-193695078
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10489939	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17304406	0.88[ASN][1000 genomes]
rs17304707	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17304721	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17304880	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376294	0.84[ASN][1000 genomes]
rs17376406	0.88[ASN][1000 genomes]
rs17376588	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17376643	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17376657	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17376699	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17376728	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17376854	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376861	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039761	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2039762	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2039763	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2039764	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2149178	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41409146	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41533746	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55874905	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55950830	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56003845	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56106540	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57049435	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57730370	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58874275	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59209979	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61242642	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831965	0.82[ASN][1000 genomes]
rs61831966	0.82[ASN][1000 genomes]
rs61831997	0.88[ASN][1000 genomes]
rs61832001	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61832029	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61832030	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61833662	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61833663	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61833664	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61833665	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61833666	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61833667	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61833671	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659749	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6671716	0.82[ASN][1000 genomes]
rs72728933	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72728954	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72728968	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72744026	0.82[ASN][1000 genomes]
rs9787078	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34989	chr1:193630577-193710196	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2756877	chr1:193631528-193710196	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758986	chr1:193631528-193710196	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv441729	chr1:193661018-193710376	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3693068	chr1:193661626-193709696	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv872832	chr1:193661626-193850407	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv34261	chr1:193663276-193710196	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv34863	chr1:193663276-193710196	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv872833	chr1:193681625-193774083	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv430058	chr1:193684343-193702343	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193695000-193697600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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