Variant report

Variant	rs17443849
Chromosome Location	chr13:39719972-39719973
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39718311..39720727-chr13:39720966..39723324,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11616492	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11616952	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11620166	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841097	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409439	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409440	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17444010	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1926472	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1977396	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4142497	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4142498	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4264268	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4383024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485232	1.00[EUR][1000 genomes]
rs4495996	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4941906	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4941907	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4941908	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4943627	0.86[ASN][1000 genomes]
rs4943633	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013353	0.94[EUR][1000 genomes]
rs5013354	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013355	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013356	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013357	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013358	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6563679	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724308	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322680	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327588	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7332696	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7337509	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7337925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7339411	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73463894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs768	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs769	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7984240	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984252	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994388	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7995665	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548655	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39719600-39720000	Enhancers	Brain Cingulate Gyrus	brain
2	chr13:39719600-39722600	Weak transcription	Ovary	ovary
3	chr13:39719800-39720000	Enhancers	Right Atrium	heart
4	chr13:39719800-39722800	Weak transcription	Adipose Nuclei	Adipose

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