Variant report

Variant	rs17444010
Chromosome Location	chr13:39745892-39745893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11616492	0.87[EUR][1000 genomes]
rs11616952	0.91[EUR][1000 genomes]
rs11620166	0.94[EUR][1000 genomes]
rs11841097	0.94[EUR][1000 genomes]
rs1409439	0.91[EUR][1000 genomes]
rs1409440	0.91[EUR][1000 genomes]
rs17443849	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1926472	0.91[EUR][1000 genomes]
rs1977396	0.91[EUR][1000 genomes]
rs4142497	0.91[EUR][1000 genomes]
rs4142498	0.91[EUR][1000 genomes]
rs4264268	0.91[EUR][1000 genomes]
rs4383024	0.95[EUR][1000 genomes]
rs4485232	0.95[EUR][1000 genomes]
rs4495996	0.91[EUR][1000 genomes]
rs4941906	0.91[EUR][1000 genomes]
rs4941907	0.91[EUR][1000 genomes]
rs4941908	0.91[EUR][1000 genomes]
rs4943633	0.91[EUR][1000 genomes]
rs5013353	0.90[EUR][1000 genomes]
rs5013354	0.91[EUR][1000 genomes]
rs5013355	0.91[EUR][1000 genomes]
rs5013356	0.91[EUR][1000 genomes]
rs5013357	0.91[EUR][1000 genomes]
rs5013358	0.88[EUR][1000 genomes]
rs6563679	0.95[EUR][1000 genomes]
rs6563681	0.95[EUR][1000 genomes]
rs724308	0.94[EUR][1000 genomes]
rs7322680	0.94[EUR][1000 genomes]
rs7325562	0.95[EUR][1000 genomes]
rs7327588	0.91[EUR][1000 genomes]
rs7332696	0.89[EUR][1000 genomes]
rs7337509	0.94[EUR][1000 genomes]
rs7337925	0.95[EUR][1000 genomes]
rs7339411	0.95[EUR][1000 genomes]
rs73463894	0.95[EUR][1000 genomes]
rs767	0.91[EUR][1000 genomes]
rs768	0.91[EUR][1000 genomes]
rs769	0.91[EUR][1000 genomes]
rs7984240	0.94[EUR][1000 genomes]
rs7984252	0.94[EUR][1000 genomes]
rs7994388	0.87[EUR][1000 genomes]
rs7995665	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1048391	chr13:39735088-39832358	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1036124	chr13:39735088-39837566	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047276	chr13:39735088-39839257	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3509263	chr13:39745852-39751850	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39739000-39764000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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