Variant report

Variant	rs7337509
Chromosome Location	chr13:39701421-39701422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11616492	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11616952	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11620166	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409439	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409440	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17443849	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17444010	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1926472	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1977396	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4142497	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4142498	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4264268	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4383024	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485232	0.98[EUR][1000 genomes]
rs4495996	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4941906	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4941907	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4941908	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4943627	0.86[ASN][1000 genomes]
rs4943633	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013353	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5013354	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013355	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013356	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013357	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013358	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6563679	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563681	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325562	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327588	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7332696	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7337925	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7339411	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73463894	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs768	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs769	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7984240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994388	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7995665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39699000-39702200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:39700000-39701600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:39700400-39704400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:39700800-39703400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:39701000-39701600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr13:39701000-39701600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:39701000-39701600	Enhancers	Brain Substantia Nigra	brain
8	chr13:39701000-39701800	Enhancers	Brain Hippocampus Middle	brain
9	chr13:39701200-39701600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:39701200-39701600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr13:39701200-39702200	Enhancers	Fetal Intestine Small	intestine
12	chr13:39701400-39702400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr13:39701400-39703400	Weak transcription	Brain Angular Gyrus	brain
14	chr13:39701400-39706800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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