Variant report

Variant	rs7339411
Chromosome Location	chr13:39719294-39719295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:39718311..39720727-chr13:39720966..39723324,2	K562	blood:
2	chr13:39625072..39625743-chr13:39719158..39719753,2	MCF-7	breast:
3	chr13:39719147..39719742-chr13:40186142..40186846,2	MCF-7	breast:
4	chr13:39718832..39719761-chr13:39837531..39838084,2	MCF-7	breast:
5	chr13:39719198..39719712-chr13:39837131..39837687,2	MCF-7	breast:
6	chr13:39719246..39719808-chr13:40250140..40251135,2	K562	blood:
7	chr13:39718635..39719664-chr13:40190328..40190925,3	MCF-7	breast:
8	chr13:39718578..39719659-chr13:39836349..39837386,3	MCF-7	breast:

No data

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11616492	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11616952	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11620166	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841097	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409439	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409440	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17443849	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17444010	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1926472	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1977396	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4142497	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4142498	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4264268	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4383024	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485232	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4495996	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4941906	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4941907	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4941908	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4943627	0.86[ASN][1000 genomes]
rs4943633	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013353	0.94[EUR][1000 genomes]
rs5013354	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013355	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013356	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013357	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013358	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6563679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563681	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724308	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322680	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327588	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7332696	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7337509	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7337925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73463894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs768	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs769	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7984240	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984252	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994388	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7995665	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39719000-39719400	Active TSS	Brain Anterior Caudate	brain
2	chr13:39719200-39719400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:39719200-39719400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:39719200-39719400	Active TSS	Ovary	ovary
5	chr13:39719200-39719600	Enhancers	Aorta	Aorta
6	chr13:39719200-39719600	Flanking Active TSS	Brain Angular Gyrus	brain
7	chr13:39719200-39719600	Flanking Active TSS	Brain Cingulate Gyrus	brain
8	chr13:39719200-39719600	Flanking Active TSS	Brain Hippocampus Middle	brain
9	chr13:39719200-39719600	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr13:39719200-39719600	Active TSS	Stomach Smooth Muscle	stomach

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