Variant report

Variant	rs4142497
Chromosome Location	chr13:39683321-39683322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11616492	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620166	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11841097	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409439	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409440	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17443849	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17444010	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1926472	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977396	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142498	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4264268	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4383024	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4485232	0.95[EUR][1000 genomes]
rs4495996	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941907	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941908	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943627	1.00[ASN][1000 genomes]
rs4943633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5013353	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5013354	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5013355	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5013356	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5013357	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5013358	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563679	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6563681	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs724308	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7322680	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7325562	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7327588	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7332696	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7337509	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7337925	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7339411	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73463894	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984240	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7984252	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7994388	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995665	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs943233	0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39679200-39683400	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr13:39679200-39683400	Enhancers	Fetal Muscle Leg	muscle
3	chr13:39679400-39683800	Enhancers	Fetal Brain Male	brain
4	chr13:39679600-39683400	Enhancers	Brain Cingulate Gyrus	brain
5	chr13:39679600-39683600	Enhancers	HSMMtube	muscle
6	chr13:39680000-39688400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:39680200-39683600	Enhancers	Fetal Brain Female	brain
8	chr13:39680800-39683400	Enhancers	Brain Hippocampus Middle	brain
9	chr13:39681200-39686800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:39682200-39684800	Enhancers	Fetal Heart	heart
11	chr13:39682400-39683600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:39682400-39684000	Enhancers	Brain Anterior Caudate	brain
13	chr13:39682600-39683400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr13:39682600-39683800	Enhancers	Brain Angular Gyrus	brain
15	chr13:39682800-39683600	Enhancers	Brain Germinal Matrix	brain
16	chr13:39683000-39683400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr13:39683000-39683600	Enhancers	Brain Substantia Nigra	brain

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