Variant report

Variant	rs17467559
Chromosome Location	chr8:69343256-69343257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1517129	1.00[CEU][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs2243700	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2243702	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2246592	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2255882	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2591008	1.00[ASW][hapmap]
rs2591010	1.00[CEU][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2591014	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2591019	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2591020	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2591021	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[LWK][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2591024	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2676632	0.95[EUR][1000 genomes]
rs2676634	0.81[EUR][1000 genomes]
rs2676649	0.88[EUR][1000 genomes]
rs2676650	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2676651	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2676653	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2676654	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2676655	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2676656	0.91[EUR][1000 genomes]
rs2944715	0.81[EUR][1000 genomes]
rs814440	0.86[CEU][hapmap]
rs814442	0.88[CEU][hapmap]
rs814455	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1023810	chr8:69308665-69440129	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539644	chr8:69308665-69440129	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv820237	chr8:69327804-69344263	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69342200-69343800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:69342800-69364800	Weak transcription	Aorta	Aorta
3	chr8:69343000-69345600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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