Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1517129	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17467559	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2243700	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2243702	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2255882	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2591010	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2591014	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2591019	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2591020	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2591021	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2591024	1.00[EUR][1000 genomes]
rs2676632	1.00[EUR][1000 genomes]
rs2676649	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2676650	0.86[EUR][1000 genomes]
rs2676651	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2676653	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2676654	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2676655	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2676656	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs814440	1.00[CEU][hapmap]
rs814442	0.81[EUR][1000 genomes]
rs814455	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1023810	chr8:69308665-69440129	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539644	chr8:69308665-69440129	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69317200-69342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:69325200-69332400	Weak transcription	Aorta	Aorta

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