Variant report

Variant	rs2591021
Chromosome Location	chr8:69297918-69297919
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1517129	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs17467559	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[LWK][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2243700	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2243702	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2246592	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2255882	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2591008	1.00[ASW][hapmap]
rs2591010	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2591014	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2591019	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2591020	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2591024	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2676632	0.94[EUR][1000 genomes]
rs2676649	0.98[EUR][1000 genomes]
rs2676650	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2676651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2676653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2676654	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2676655	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2676656	0.96[EUR][1000 genomes]
rs814440	0.86[CEU][hapmap]
rs814442	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs814455	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1031040	chr8:69265471-69315554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv508512	chr8:69268794-69324532	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69295600-69299000	Enhancers	Fetal Lung	lung
2	chr8:69296200-69299200	Weak transcription	Aorta	Aorta
3	chr8:69296800-69303800	Weak transcription	Adipose Nuclei	Adipose
4	chr8:69297000-69298800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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